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author:

Huang, X. (Huang, X..) [1] | Ho, T. (Ho, T..) [3] | Chakrabarty, K. (Chakrabarty, K..) [4] | Guo, W. (Guo, W..) [5]

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Abstract:

The emergence of flow-based microfluidic biochips (FBMBs) has increased the automation level of biochemical procedures, and these lab-on-a-chip devices are now being used for enzyme-linked immunosorbent assay, point-of-care diagnosis, etc. As fabrication technology advances, the feature size of FBMBs keeps shrinking, thereby introducing a series of knotty challenges to the physical design of FBMBs. In particular, timing-sensitive bioassays, such as forensic DNA typing and Chromatin immunoprecipitation, require a highly accurate time-control of fluids within a limited completion time. However, existing work does not consider the real-time requirements of these bioassays. In this paper, we formulate the first practical timing-driven flow-channel network construction problem for FBMBs and present a performance-driven placement and routing algorithm for solving this problem. Given the design specifications of a biochip and its biochemistry application, our goal is to construct a high-quality flow-channel network with minimized timing delay and total cost. Experimental results on fourteen benchmarks confirm that our algorithm leads to better timing behavior and lower chip cost. IEEE

Keyword:

Biochips; Delays; DNA; Flow-based microfluidic biochips; flow-channel network.; Immune system; Mixers; timing-driven; Valves

Community:

  • [ 1 ] [Huang, X.]Department of Computer Science, National Tsing Hua University, Hsinchu 30013, Taiwan.
  • [ 2 ] [Huang, X.]College of Mathematics and Computer Science, Fuzhou University, Fuzhou, Fujian, 350116, China, and also with the carried out part of this work as a visiting researcher at Duke University and as a postdoctoral researcher at National Tsing Hua University.
  • [ 3 ] [Ho, T.]Department of Computer Science, National Tsing Hua University, Hsinchu 30013, Taiwan.
  • [ 4 ] [Chakrabarty, K.]Department of Electrical and Computer Engineering, Duke University, Durham, NC 27708, USA.
  • [ 5 ] [Guo, W.]College of Mathematics and Computer Science, Fuzhou University, Fuzhou, Fujian, 350116, China.

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IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems

ISSN: 0278-0070

Year: 2019

2 . 1 6 8

JCR@2019

2 . 7 0 0

JCR@2023

ESI HC Threshold:150

JCR Journal Grade:3

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 29

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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