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author:

Xue, G. (Xue, G..) [1] | Xie, X. (Xie, X..) [2] | Zhou, Y. (Zhou, Y..) [3] | Yuan, C. (Yuan, C..) [4] | Huang, M. (Huang, M..) [5] | Jiang, L. (Jiang, L..) [6]

Indexed by:

Scopus

Abstract:

Peptidic inhibitors of proteases are attracting increasing interest not only as drug candidates but also for studying the function and regulation mechanisms of these enzymes. Previously, we screened out a cyclic peptide inhibitor of human uPA (Figure presented.) and found that Ala substitution of P2 residue turns upain-1 to a substrate. To further investigate the effect of P2 residue on the peptide behavior transformation, we constructed upain-1-W3F, which has Phe replacement in the P2 position. We determined KD and Ki of upain-1-W3F and found that upain-1-W3F might still exist as an inhibitor. Furthermore, the high-resolution crystal structure of upain-1-W3F·uPA reveals that upain-1-W3F indeed stays as an intact inhibitor bind to uPA. We thus propose that the P2 residue plays a nonnegligible role in the conversion of upain-1 to a substrate. These results also proposed a strategy to optimize the pharmacological properties of peptide-based drug candidates by hydrophobicity and steric hindrance. Abbreviations : uPA: urokinase-type plasminogen activator; SPD: serine protease domain; S1 pocket: specific substrate-binding pocket. © 2020, © 2020 Japan Society for Bioscience, Biotechnology, and Agrochemistry.

Keyword:

crystal structure; Cyclic peptide inhibitor; serine protease; uPA; upain-1-W3F

Community:

  • [ 1 ] [Xue, G.]College of Chemistry, Fuzhou University, Fuzhou, China
  • [ 2 ] [Xue, G.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China
  • [ 3 ] [Xie, X.]College of Chemistry, Fuzhou University, Fuzhou, China
  • [ 4 ] [Xie, X.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China
  • [ 5 ] [Zhou, Y.]College of Chemistry, Fuzhou University, Fuzhou, China
  • [ 6 ] [Zhou, Y.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China
  • [ 7 ] [Yuan, C.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China
  • [ 8 ] [Yuan, C.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, China
  • [ 9 ] [Huang, M.]College of Chemistry, Fuzhou University, Fuzhou, China
  • [ 10 ] [Huang, M.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China
  • [ 11 ] [Huang, M.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, China
  • [ 12 ] [Jiang, L.]College of Chemistry, Fuzhou University, Fuzhou, China
  • [ 13 ] [Jiang, L.]National & Local Joint Biomedical Engineering Research Center on Photodynamic Technologies, College of Chemistry, Fuzhou, China

Reprint 's Address:

  • [Huang, M.]College of Chemistry, Fuzhou UniversityChina

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Source :

Bioscience, Biotechnology and Biochemistry

ISSN: 0916-8451

Year: 2020

Issue: 6

Volume: 84

Page: 1153-1159

2 . 0 4 3

JCR@2020

1 . 4 0 0

JCR@2023

ESI HC Threshold:156

JCR Journal Grade:3

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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