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author:

Yang, Chu-Wen (Yang, Chu-Wen.) [1] | Shi, Zhi-Ling (Shi, Zhi-Ling.) [2]

Indexed by:

SCIE

Abstract:

A coronavirus pandemic caused by a novel coronavirus (SARS-CoV-2) has spread rapidly worldwide since December 2019. Improved understanding and new strategies to cope with novel coronaviruses are urgently needed. Viruses (especially RNA viruses) encode a limited number and size (length of polypeptide chain) of viral proteins and must interact with the host cell components to control (hijack) the host cell machinery. To achieve this goal, the extensive mimicry of SLiMs in host proteins provides an effective strategy. However, little is known regarding SLiMs in coronavirus proteins and their potential targets in host cells. The objective of this study is to uncover SLiMs in coronavirus proteins that are present within host cells. These SLiMs have a high possibility of interacting with host intracellular proteins and hijacking the host cell machinery for virus replication and dissemination. In total, 1,479 SLiM hits were identified in the 16 proteins of 590 coronaviruses infecting humans. Overall, 106 host proteins were identified that may interact with SLiMs in 16 coronavirus proteins. These SLiM-interacting proteins are composed of many intracellular key regulators, such as receptors, transcription factors and kinases, and may have important contributions to virus replication, immune evasion and viral pathogenesis. A total of 209 pathways containing proteins that may interact with SLiMs in coronavirus proteins were identified. This study uncovers potential mechanisms by which coronaviruses hijack the host cell machinery. These results provide potential therapeutic targets for viral infections.

Keyword:

Community:

  • [ 1 ] [Yang, Chu-Wen]Soochow Univ, Ctr Appl Artificial Intelligence Res, Dept Microbiol, Taipei, Taiwan
  • [ 2 ] [Shi, Zhi-Ling]Fuzhou Univ, Ocean Sch, Fuzhou, Peoples R China

Reprint 's Address:

  • [Yang, Chu-Wen]Soochow Univ, Ctr Appl Artificial Intelligence Res, Dept Microbiol, Taipei, Taiwan

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Source :

PLOS ONE

ISSN: 1932-6203

Year: 2021

Issue: 2

Volume: 16

3 . 7 5 2

JCR@2021

2 . 9 0 0

JCR@2023

ESI Discipline: MULTIDISCIPLINARY;

ESI HC Threshold:186

JCR Journal Grade:2

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count: 2

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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