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author:

Xu, Wei (Xu, Wei.) [1] | Lin, Wenzhen (Lin, Wenzhen.) [2] | Wang, Zhichao (Wang, Zhichao.) [3] | Gao, Yuanhao (Gao, Yuanhao.) [4] | Luo, Yu (Luo, Yu.) [5] | Grossart, Hans-Peter (Grossart, Hans-Peter.) [6] | Guo, Ying (Guo, Ying.) [7] | Gao, Qiancheng (Gao, Qiancheng.) [8] | Huang, Lixing (Huang, Lixing.) [9] | Luo, Zhuhua (Luo, Zhuhua.) [10]

Indexed by:

EI SCIE

Abstract:

The genus Vibrio contains a diverse group of heterotrophic bacteria, which are members of ubiquitous and abundant microbial communities in coastal ecosystems. Vibrio has been frequently found in a wide range of marine environments either by employing Vibrio-specific 16S rRNA sequencing or culturing methods. A combination of molecular and cultivation-dependent methods was developed to more precisely discriminate between different members of the genus Vibrio in seawater. This newly developed assay was subsequently applied to characterize Vibrio community composition in surface water at 18 mariculture sites. It Substantially improved the taxonomic resolution of Vibrio species when compared to traditional 16S rRNA analysis. Our qPCR and cultivation analyses revealed that average Vibrio abundance (Vibrio 16S rRNA gene copy numbers: 3.46 x 10(6) to 6.70 x 10(6) copies L-1) and live cell numbers (5.65 x 10(4)-5.75 x 10(5) cfu mL(-1)) are significantly related to pH. Total bacteria and Vibrio-specific 16S rRNA metabarcode sequenceing resulted in a total of 10 and 32 operational taxonomic units (OTUs), respectively, and 15 Vibrio species were identified by targeted cultivation of Vibrio strains, with Vibrio fortis and V. brasiliensis dominating in the mariculture areas. The purpose of this study was to combine several analytical methods to improve current sequence-based Vibrio community surveys, and to prove for the effectiveness of this methodological approach comprehensively testing for Vibrio dynamics in different coastal environments. (C) 2021 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.

Keyword:

16S rRNA Cfu Dongshan bay Mariculture Vibrio abundance Vibrio diversity

Community:

  • [ 1 ] [Xu, Wei]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China
  • [ 2 ] [Wang, Zhichao]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China
  • [ 3 ] [Gao, Yuanhao]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China
  • [ 4 ] [Luo, Yu]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China
  • [ 5 ] [Luo, Zhuhua]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China
  • [ 6 ] [Xu, Wei]Fujian Inst Subtrop Bot, Fujian Key Lab Subtrop Plant Physiol & Biochem, Xiamen 361002, Peoples R China
  • [ 7 ] [Lin, Wenzhen]Fujian Inst Subtrop Bot, Fujian Key Lab Subtrop Plant Physiol & Biochem, Xiamen 361002, Peoples R China
  • [ 8 ] [Guo, Ying]Fujian Inst Subtrop Bot, Fujian Key Lab Subtrop Plant Physiol & Biochem, Xiamen 361002, Peoples R China
  • [ 9 ] [Gao, Qiancheng]Jimei Univ, Fisheries Coll, Fujian Engn Res Ctr Aquat Breeding & Hlth Aquacul, Xiamen 361021, Peoples R China
  • [ 10 ] [Huang, Lixing]Jimei Univ, Fisheries Coll, Fujian Engn Res Ctr Aquat Breeding & Hlth Aquacul, Xiamen 361021, Peoples R China
  • [ 11 ] [Xu, Wei]Fuzhou Univ, Sch Adv Mfg, Jinjiang 362200, Peoples R China
  • [ 12 ] [Luo, Yu]Fuzhou Univ, Sch Adv Mfg, Jinjiang 362200, Peoples R China
  • [ 13 ] [Luo, Zhuhua]Fuzhou Univ, Sch Adv Mfg, Jinjiang 362200, Peoples R China
  • [ 14 ] [Luo, Zhuhua]Nanjing Univ Informat Sci & Technol, Sch Marine Sci, Nanjing 210044, Peoples R China
  • [ 15 ] [Grossart, Hans-Peter]Leibniz Inst Freshwater Ecol & Inland Fisheries, Dept Expt Limnol, D-16775 Stechlin, Germany
  • [ 16 ] [Grossart, Hans-Peter]Postdam Univ, Inst Biochem & Biol, D-14469 Potsdam, Germany

Reprint 's Address:

  • 蔡其洪

    [Luo, Zhuhua]Minist Nat Resources, Inst Oceanog 3, Key Lab Marine Biogenet Resources, 178 Daxue Rd, Xiamen 361005, Peoples R China;;[Huang, Lixing]Jimei Univ, Fisheries Coll, 43 Yindou St, Xiamen 361021, Fujian, Peoples R China

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Source :

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

ISSN: 2001-0370

Year: 2021

Volume: 19

Page: 4381-4393

6 . 1 5 5

JCR@2021

4 . 5 0 0

JCR@2023

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:104

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 13

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 3

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