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author:

Su, Qiuju (Su, Qiuju.) [1] | Zhou, Xiang (Zhou, Xiang.) [2] | Wu, Tianwen (Wu, Tianwen.) [3] | Li, Kui (Li, Kui.) [4] | Xu, Wentao (Xu, Wentao.) [5] | Lin, Zhenyu (Lin, Zhenyu.) [6] (Scholars:林振宇) | Shen, Ping (Shen, Ping.) [7] | Liu, Bang (Liu, Bang.) [8]

Indexed by:

SCIE

Abstract:

Background Genome-editing techniques incorporating artificial nucleases develop rapidly and enable efficient and precise modification of genomic DNA of numerous organisms. The present research aimed to establish a rapid, sensitive and visual method for genotyping of germline genome-edited mutants with small genomic fragment deletion. Methods and Results The genome-edited pigs with 2-bp deletion and 11-bp deletion of Myostatin (MSTN) gene generated by TALENs system were used as test materials to check the proposed allele-specific PCR (AS-PCR) and lateral flow nucleic acid biosensor (LFNAB) cascade method. AS-PCR can produce products with different tags to distinguish genome-edited alleles and wild-type alleles. A LFNAB was applied to do visual detection of AS-PCR products without using additional instruments. Furthermore, we demonstrated that AS-PCR and LFNAB cascade could accurately and visually distinguish genome-edited pigs with small genomic fragment deletion of Myostatin (MSTN) gene and wild-type pigs with limit of detection (LOD) of 0.1 ng. Conclusion The proposed AS-PCR and LFNAB cascade can do rapid and visual genotyping of genome-edited mutants with small genomic fragment deletion, serving as a platform for genome-edited animal genotyping.

Keyword:

AS-PCR Genome-editing Genotyping LFNAB Pigs

Community:

  • [ 1 ] [Su, Qiuju]Huazhong Agr Univ, Key Lab Agr Anim Genet Breeding & Reprod, Minist Educ, Wuhan 430070, Peoples R China
  • [ 2 ] [Zhou, Xiang]Huazhong Agr Univ, Key Lab Agr Anim Genet Breeding & Reprod, Minist Educ, Wuhan 430070, Peoples R China
  • [ 3 ] [Liu, Bang]Huazhong Agr Univ, Key Lab Agr Anim Genet Breeding & Reprod, Minist Educ, Wuhan 430070, Peoples R China
  • [ 4 ] [Zhou, Xiang]Cooperat Innovat Ctr Sustainable Pig Prod, Wuhan 430070, Peoples R China
  • [ 5 ] [Liu, Bang]Cooperat Innovat Ctr Sustainable Pig Prod, Wuhan 430070, Peoples R China
  • [ 6 ] [Wu, Tianwen]Chinese Acad Agr Sci, Inst Anim Sci, Beijing 100193, Peoples R China
  • [ 7 ] [Li, Kui]Chinese Acad Agr Sci, Inst Anim Sci, Beijing 100193, Peoples R China
  • [ 8 ] [Xu, Wentao]China Agr Univ, Coll Food Sci & Nutr Engn, Beijing Adv Innovat Ctr Food Nutr & Human Hlth, Beijing 100083, Peoples R China
  • [ 9 ] [Lin, Zhenyu]Fuzhou Univ, Dept Chem, MOE Key Lab Anal & Detect Food Safety, Fujian Prov Key Lab Anal & Detect Technol Food Sa, Fuzhou 350002, Fujian, Peoples R China
  • [ 10 ] [Shen, Ping]Minist Agr & Rural Affairs, Dev Ctr Sci & Technol, Beijing 100045, Peoples R China

Reprint 's Address:

  • [Liu, Bang]Huazhong Agr Univ, Key Lab Agr Anim Genet Breeding & Reprod, Minist Educ, Wuhan 430070, Peoples R China;;[Liu, Bang]Cooperat Innovat Ctr Sustainable Pig Prod, Wuhan 430070, Peoples R China

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Source :

MOLECULAR BIOLOGY REPORTS

ISSN: 0301-4851

Year: 2021

Issue: 11

Volume: 48

Page: 7325-7332

2 . 7 4 2

JCR@2021

2 . 6 0 0

JCR@2023

ESI Discipline: MOLECULAR BIOLOGY & GENETICS;

ESI HC Threshold:153

JCR Journal Grade:4

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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