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author:

Chen, Zheng-Xing (Chen, Zheng-Xing.) [1] | Yang, Lin (Yang, Lin.) [2] | Li, Qian (Li, Qian.) [3] | Zhu, Yun-Jin (Zhu, Yun-Jin.) [4] | Zheng, Li (Zheng, Li.) [5]

Indexed by:

Scopus SCIE

Abstract:

Roseivivax marinus strain TCYB24 is a rod-shaped bacterium of Rhodobacteraceae isolated from the gill of deepsea mussel Bathymodiolus marisindicus which collected from the Tiancheng hydrothermal vent under depth of 2700 m on the southwest Indian ridge. In our previous study, the strain TCYB24 was proved to produce quorum sensing signal of N-Acyl-homoserine lactones (AHLs) and form biofilm. In order to determine its adaptive mechanism against the extreme environment of deep-sea hydrothermal vents, the whole genome was sequenced by high-throughput Illumina tag sequencing. The results show the whole genome consists of one circular chromosome and eight circular plasmids, with a total length of 4.60 Mb (G + C content of 67.4%), 4338 open reading frames, 46 tRNAs and 6 rRNA operons. According to the genome-wide functional annotation, numbers of heavy metal resistance, high pressure and cold adapting related genes were found. In addition, genes about exopolysaccharide (EPS) biosynthesis and secretion and biofilm formation, which facilitate bacteria to resist extreme environments, were identified. Intriguingly, a pair of RaiI/R-type quorum sensing system was discovered firstly in the bacterium isolated from hydrothermal environment. The results may help to understand genetic underpinning of extreme environmental adaptation mechanism of bacteria in deep-sea hydrothermal area.

Keyword:

Deep-sea hydrothermal vent Environmental adaptation Genome sequencing Quorum sensing system Roseivivax marinus

Community:

  • [ 1 ] [Chen, Zheng-Xing]Fuzhou Univ, Sch Adv Mfg, Jinjiang 362200, Peoples R China
  • [ 2 ] [Yang, Lin]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao 266061, Peoples R China
  • [ 3 ] [Li, Qian]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao 266061, Peoples R China
  • [ 4 ] [Zhu, Yun-Jin]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao 266061, Peoples R China
  • [ 5 ] [Zheng, Li]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao 266061, Peoples R China
  • [ 6 ] [Zheng, Li]Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China

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Source :

MARINE GENOMICS

ISSN: 1874-7787

Year: 2022

Volume: 63

1 . 9

JCR@2022

1 . 3 0 0

JCR@2023

ESI Discipline: PLANT & ANIMAL SCIENCE;

ESI HC Threshold:34

JCR Journal Grade:4

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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