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author:

Zheng, Q. (Zheng, Q..) [1] | Wang, R. (Wang, R..) [2] | Ju, X. (Ju, X..) [3] | Gu, X. (Gu, X..) [4] | Xu, X. (Xu, X..) [5] | Chen, Z. (Chen, Z..) [6] | Li, L. (Li, L..) [7]

Indexed by:

Scopus

Abstract:

L-ribulose, a kind of high-value rare sugar, could be utilized to manufacture L-form sugars and antiviral drugs, generally produced from L-arabinose as a substrate. However, the production of L-ribulose from L-arabinose is limited by the equilibrium ratio of the catalytic reaction, hence, it is necessary to explore a new biological enzymatic method to produce L-ribulose. Ribose-5-phosphate isomerase (Rpi) is an enzyme that can catalyze the reversible isomerization between L-ribose and L-ribulose, which is of great significance for the preparation of L-ribulose. In order to obtain highly active ribose-5-phosphate isomerase to manufacture L-ribulose, ribose-5-phosphate isomerase A (OsRpiA) from Ochrobactrum sp. CSL1 was engineered based on structural and sequence analyses. Through a rational design strategy, a triple-mutant strain A10T/T32S/G101N with 160% activity was acquired. The enzymatic properties of the mutant were systematically investigated, and the optimum conditions were characterized to achieve the maximum yield of L-ribulose. Kinetic analysis clarified that the A10T/T32S/G101N mutant had a stronger affinity for the substrate and increased catalytic efficiency. Furthermore, molecular dynamics simulations indicated that the binding of the substrate to A10T/T32S/G101N was more stable than that of wild type. The shorter distance between the catalytic residues of A10T/T32S/G101N and L-ribose illuminated the increased activity. Overall, the present study provided a solid basis for demonstrating the complex functions of crucial residues in RpiAs as well as in rare sugar preparation. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Keyword:

L-ribose L-ribulose Ochrobactrum sp. CSL1 Ribose-5-phosphate isomerase A

Community:

  • [ 1 ] [Zheng, Q.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China
  • [ 2 ] [Wang, R.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China
  • [ 3 ] [Ju, X.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China
  • [ 4 ] [Gu, X.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China
  • [ 5 ] [Xu, X.]Fujian Key Laboratory of Marine Enzyme Engineering, College of Biosciences and Engineering, Fuzhou University, Fuzhou, 350116, China
  • [ 6 ] [Chen, Z.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China
  • [ 7 ] [Li, L.]School of Chemistry and Life Sciences, Suzhou University of Science and Technology, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, Suzhou, 215009, China

Reprint 's Address:

  • [Chen, Z.]School of Chemistry and Life Sciences, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, China;;[Li, L.]School of Chemistry and Life Sciences, No. 99 Xuefu Rd., Huqiu District, Jiangsu Province, China

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Source :

Applied Biochemistry and Biotechnology

ISSN: 0273-2289

Year: 2022

Issue: 10

Volume: 194

Page: 4852-4866

3 . 0

JCR@2022

3 . 1 0 0

JCR@2023

ESI HC Threshold:60

JCR Journal Grade:3

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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