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author:

Liu, Shenghao (Liu, Shenghao.) [1] | Fang, Shuo (Fang, Shuo.) [2] | Cong, Bailin (Cong, Bailin.) [3] | Li, Tingting (Li, Tingting.) [4] | Yi, Dan (Yi, Dan.) [5] | Zhang, Zhaohui (Zhang, Zhaohui.) [6] | Zhao, Linlin (Zhao, Linlin.) [7] (Scholars:赵林林) | Zhang, Pengying (Zhang, Pengying.) [8]

Indexed by:

Scopus SCIE

Abstract:

The Antarctic continent has extreme natural environment and fragile ecosystem. Mosses are one of the dominant floras in the Antarctic continent. However, their genomic features and adaptation processes to extreme environments remain poorly understood. Here, we assembled the high-quality genome sequence of the Antarctic moss (Pohlia nutans) with 698.20 Mb and 22 chromosomes. We found that the high proportion of repeat sequences and a recent whole-genome duplication (WGD) contribute to the large size genome of P. nutans when compared to other bryophytes. The genome of P. nutans harbors the signatures of massive segmental gene duplications and large expansions of gene families, likely facilitating neofunctionalization. Genomic characteristics that may support the Antarctic lifestyle of this moss comprise expanded gene families involved in phenylpropanoid biosynthesis, unsaturated fatty acid biosynthesis, and plant hormone signal transduction. Additional contributions include the significant expansion and upregulation of several genes encoding DNA photolyase, antioxidant enzymes, flavonoid biosynthesis enzymes, possibly reflecting diverse adaptive strategies. Notably, integrated multi-omic analyses elucidate flavonoid biosynthesis may function as the reactive oxygen species detoxification under UV-B radiation. Our studies provide insight into the unique features of the Antarctic moss genome and their molecular responses to extreme terrestrial environments.

Keyword:

Antarctic bryophyte flavonoid biosynthesis gene-family expansions metabolomic profiling UV-B radiation whole-genome sequencing

Community:

  • [ 1 ] [Liu, Shenghao]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 2 ] [Fang, Shuo]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 3 ] [Cong, Bailin]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 4 ] [Li, Tingting]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 5 ] [Yi, Dan]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 6 ] [Zhang, Zhaohui]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 7 ] [Zhao, Linlin]Minist Nat Resources, Key Lab Marine Ecoenvironm Sci & Technol, Inst Oceanog 1, Qingdao, Peoples R China
  • [ 8 ] [Liu, Shenghao]Fuzhou Univ, Sch Adv Mfg, Jinjiang, Peoples R China
  • [ 9 ] [Cong, Bailin]Fuzhou Univ, Sch Adv Mfg, Jinjiang, Peoples R China
  • [ 10 ] [Zhao, Linlin]Fuzhou Univ, Sch Adv Mfg, Jinjiang, Peoples R China
  • [ 11 ] [Zhang, Pengying]Sch Life Sci, Natl Glycoengn Res Ctr, Qingdao, Peoples R China
  • [ 12 ] [Zhang, Pengying]Shandong Univ, Qingdao, Peoples R China

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Source :

FRONTIERS IN PLANT SCIENCE

ISSN: 1664-462X

Year: 2022

Volume: 13

5 . 6

JCR@2022

4 . 1 0 0

JCR@2023

ESI Discipline: PLANT & ANIMAL SCIENCE;

ESI HC Threshold:34

JCR Journal Grade:1

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count: 14

SCOPUS Cited Count: 15

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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