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author:

Guo, S. (Guo, S..) [1] | Lin, J. (Lin, J..) [2] | Lin, L. (Lin, L..) [3] | Xu, W. (Xu, W..) [4] | Guo, Y. (Guo, Y..) [5] | Xu, Z. (Xu, Z..) [6] | Lu, C. (Lu, C..) [7] | Shi, X. (Shi, X..) [8] | Chen, L. (Chen, L..) [9] | Yang, H. (Yang, H..) [10]

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Scopus CSCD

Abstract:

Small molecule aptamers discovered by traditional selection methods usually lack conformational changes upon target binding. This limits the use of aptamers as molecular probes for small molecule detection and regulatory elements of genetic circuits. Here, we report a new method called capture and in vitro transcription-systematic evolution of ligands by exponential enrichment (CIVT-SELEX) to select DNA aptamers that can not only bind to small molecule ligands but also undergo significant conformational changes. Through this method, we select a structure-switching aptamer of uridine-5′-diphosphate (UDP). Taking advantage of its conformational changes, we first construct a UDP-responsive transcriptional switch by inserting the aptamer in a genetic circuit and demonstrate that it can respond to the addition of UDP and regulate the transcription of downstream genes. We also build a UDP aptamer-based biosensor that can be used for active glycosyltransferase screening. We believe this method can provide a universal platform for selecting small molecule aptamers with conformational changes and expand the use of aptamers in small molecule detection and genetic regulation. [Figure not available: see fulltext.] © 2023, Science China Press.

Keyword:

aptamers biosensors CIVT-SELEX conformational change small molecule

Community:

  • [ 1 ] [Guo S.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 2 ] [Lin J.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 3 ] [Lin L.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 4 ] [Xu W.]School of Pharmacy, Fujian University of Traditional Chinese Medicine, Fuzhou, 350122, China
  • [ 5 ] [Guo Y.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 6 ] [Xu Z.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 7 ] [Lu C.]Key Laboratory for Analytical Science of Food Safety and Biology of Ministry of Education, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou, 350108, China
  • [ 8 ] [Shi X.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 9 ] [Shi X.]Fujian Key Laboratory of Medical Instrument and Pharmaceutical Technology, Fuzhou University, Fuzhou, 350108, China
  • [ 10 ] [Chen L.]Key Laboratory for Analytical Science of Food Safety and Biology of Ministry of Education, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou, 350108, China
  • [ 11 ] [Yang H.]College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
  • [ 12 ] [Yang H.]Key Laboratory for Analytical Science of Food Safety and Biology of Ministry of Education, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou, 350108, China

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Source :

Science China Chemistry

ISSN: 1674-7291

Year: 2023

Issue: 5

Volume: 66

Page: 1529-1536

1 0 . 4

JCR@2023

1 0 . 4 0 0

JCR@2023

ESI HC Threshold:39

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count: 4

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 4

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