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author:

Wei, Jinhang (Wei, Jinhang.) [1] | Zhu, Yangbin (Zhu, Yangbin.) [2] | Zhuo, Linlin (Zhuo, Linlin.) [3] | Liu, Yang (Liu, Yang.) [4] | Fu, Xiangzheng (Fu, Xiangzheng.) [5] | Li, Fushan (Li, Fushan.) [6] (Scholars:李福山)

Indexed by:

EI Scopus SCIE

Abstract:

Accurate prediction of Drug-Target Interactions (DTI) is crucial for drug development. Current state-of-the-art deep learning methods have significantly advanced the field; however, these methods exhibit limitations in predictive performance and the propensity for false negatives. Therefore, we propose EADTN, a simple and efficient ensemble model. We have designed an innovative feature adaptation technique to automatically extract local weights of drugs and targets, and we utilize clustering-enhanced parameter fine-tuning to overcome the issue of false negatives, thereby enhancing its reliability in drug discovery. Based on EADTN, we also propose a Shapley value-based method for identifying key drug substructures, effectively enhancing the model's interpretability. Additionally, we utilized EADTN to reveal potential interactions between NQO1 targets and the drugs SIRT-IN-1 and LY2183240, which were subsequently validated through wet-lab experiments. Experimental evidence demonstrates that EADTN consistently outperforms existing best-performing models across various data sets, promising significant benefits in fields such as drug repositioning.

Keyword:

Community:

  • [ 1 ] [Wei, Jinhang]Wenzhou Univ Technol, Sch Data Sci & Artificial Intelligence, Wenzhou 325000, Peoples R China
  • [ 2 ] [Zhu, Yangbin]Wenzhou Univ Technol, Sch Data Sci & Artificial Intelligence, Wenzhou 325000, Peoples R China
  • [ 3 ] [Zhuo, Linlin]Wenzhou Univ Technol, Sch Data Sci & Artificial Intelligence, Wenzhou 325000, Peoples R China
  • [ 4 ] [Liu, Yang]Fujian Normal Univ, Strait Inst Flexible Elect SIFE, Fujian Key Lab Flexible Elect, SIFE Future Technol, Fuzhou 350002, Peoples R China
  • [ 5 ] [Liu, Yang]Strait Lab Flexible Elect SLoFE, Fuzhou 350002, Peoples R China
  • [ 6 ] [Fu, Xiangzheng]Hunan Univ, Coll Comp Sci & Elect Engn, Changsha 410082, Peoples R China
  • [ 7 ] [Li, Fushan]Fuzhou Univ, Inst Optoelect Technol, Fuzhou 350002, Peoples R China
  • [ 8 ] [Li, Fushan]Fujian Sci & Technol Innovat Lab Optoelect Informa, Fuzhou 350116, Peoples R China

Reprint 's Address:

  • [Zhuo, Linlin]Wenzhou Univ Technol, Sch Data Sci & Artificial Intelligence, Wenzhou 325000, Peoples R China;;[Liu, Yang]Fujian Normal Univ, Strait Inst Flexible Elect SIFE, Fujian Key Lab Flexible Elect, SIFE Future Technol, Fuzhou 350002, Peoples R China;;[Liu, Yang]Strait Lab Flexible Elect SLoFE, Fuzhou 350002, Peoples R China;;[Li, Fushan]Fuzhou Univ, Inst Optoelect Technol, Fuzhou 350002, Peoples R China;;[Li, Fushan]Fujian Sci & Technol Innovat Lab Optoelect Informa, Fuzhou 350116, Peoples R China;;

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Source :

JOURNAL OF PHYSICAL CHEMISTRY LETTERS

ISSN: 1948-7185

Year: 2024

Issue: 30

Volume: 15

Page: 7681-7693

4 . 9 0 0

JCR@2023

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count: 13

SCOPUS Cited Count: 18

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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