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author:

Huang, Xing (Huang, Xing.) [1] | Ho, Tsung-Yi (Ho, Tsung-Yi.) [2] | Chakrabarty, Krishnendu (Chakrabarty, Krishnendu.) [3] | Guo, Wenzhong (Guo, Wenzhong.) [4] (Scholars:郭文忠)

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Scopus SCIE

Abstract:

The emergence of flow-based microfluidic biochips (FBMBs) has increased the automation level of biochemical procedures, and these lab-on-a-chip devices are now being used for enzyme-linked immunosorbent assay, point-of-care diagnosis, etc. As fabrication technology advances, the feature size of FBMBs keeps shrinking, thereby introducing a series of knotty challenges to the physical design of FBMBs. In particular, timing-sensitive bioassays, such as forensic DNA typing and chromatin immunoprecipitation, require a highly accurate time-control of fluids within a limited completion time. However, existing work does not consider the real-time requirements of these bioassays. In this paper, we formulate the first practical timing-driven flow-channel network construction problem for FBMBs and present a performance-driven placement and routing algorithm for solving this problem. Given the design specifications of a biochip and its biochemistry application, our goal is to construct a high-quality flow-channel network with minimized timing delay and total cost. The experimental results on 14 benchmarks confirm that our algorithm leads to better timing behavior and lower chip cost.

Keyword:

Biochips Delays DNA Flow-based microfluidic biochips (FBMBs) flow-channel network Immune system Mixers timing-driven Valves

Community:

  • [ 1 ] [Huang, Xing]Natl Tsing Hua Univ, Dept Comp Sci, Hsinchu 30013, Taiwan
  • [ 2 ] [Ho, Tsung-Yi]Natl Tsing Hua Univ, Dept Comp Sci, Hsinchu 30013, Taiwan
  • [ 3 ] [Huang, Xing]Fuzhou Univ, Coll Math & Comp Sci, Fuzhou 350116, Peoples R China
  • [ 4 ] [Guo, Wenzhong]Fuzhou Univ, Coll Math & Comp Sci, Fuzhou 350116, Peoples R China
  • [ 5 ] [Huang, Xing]Duke Univ, Dept Elect & Comp Engn, Durham, NC 27708 USA
  • [ 6 ] [Chakrabarty, Krishnendu]Duke Univ, Dept Elect & Comp Engn, Durham, NC 27708 USA

Reprint 's Address:

  • 郭文忠

    [Guo, Wenzhong]Fuzhou Univ, Coll Math & Comp Sci, Fuzhou 350116, Peoples R China

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Source :

IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS

ISSN: 0278-0070

Year: 2020

Issue: 6

Volume: 39

Page: 1314-1327

2 . 8 0 7

JCR@2020

2 . 7 0 0

JCR@2023

ESI Discipline: ENGINEERING;

ESI HC Threshold:132

JCR Journal Grade:2

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count: 23

SCOPUS Cited Count: 29

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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