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author:

Wang, Guozeng (Wang, Guozeng.) [1] (Scholars:王国增) | Ren, Yaxin (Ren, Yaxin.) [2] | Ng, Tzi Bun (Ng, Tzi Bun.) [3] | Streit, Wolfgang R. (Streit, Wolfgang R..) [4] | Ye, Xiuyun (Ye, Xiuyun.) [5] (Scholars:叶秀云)

Indexed by:

EI Scopus SCIE

Abstract:

ObjectiveTo explore the diversity of glycoside hydrolase family 10 xylanase genes in the sediment of soda lake Dabusu by using high-throughput amplicon sequencing based on the Illumina HiSeq2500 platform.ResultsA total of 227,420 clean reads, representing approximately 49.5Mbp, were obtained. Operational taxonomic unit (OTU) classification, with a 95% sequence identity cut-off, resulted in 467 OTUs with 392 annotated as GH10 xylanase, exhibiting 35-99% protein sequence identity with their closest-related xylanases in GenBank. Above 75% of the total OTUs demonstrated less than 80% identity with known xylanases. In addition, xylanases derived from the sediment were found to be affiliated to 12 different phyla, with Bacteroidetes, Proteobacteria, Actinobacteria, Firmicutes, Verrucomicrobia, and Basidiomycota being the dominant phyla. Moreover, barcode sequence had a major effect on abundance with only a minor effect on diversity.ConclusionsHigh-throughput amplicon sequencing offers insight into xylanase gene diversity at a substantially higher resolution and lesser cost than library cloning and Sanger sequencing, facilitating a more thorough understanding of xylanase distribution and ecology.

Keyword:

Amplicon sequencing Gene diversity High-throughput Metagenomics Soda lake Xylanase

Community:

  • [ 1 ] [Wang, Guozeng]Fuzhou Univ, Coll Biol Sci & Engn, Qi Shan Campus,2 Xueyuan Rd, Fuzhou 350116, Fujian, Peoples R China
  • [ 2 ] [Ren, Yaxin]Fuzhou Univ, Coll Biol Sci & Engn, Qi Shan Campus,2 Xueyuan Rd, Fuzhou 350116, Fujian, Peoples R China
  • [ 3 ] [Ye, Xiuyun]Fuzhou Univ, Coll Biol Sci & Engn, Qi Shan Campus,2 Xueyuan Rd, Fuzhou 350116, Fujian, Peoples R China
  • [ 4 ] [Wang, Guozeng]Fuzhou Univ, Fujian Key Lab Marine Enzyme Engn, 2 Xueyuan Rd, Fuzhou, Fujian, Peoples R China
  • [ 5 ] [Ren, Yaxin]Fuzhou Univ, Fujian Key Lab Marine Enzyme Engn, 2 Xueyuan Rd, Fuzhou, Fujian, Peoples R China
  • [ 6 ] [Ye, Xiuyun]Fuzhou Univ, Fujian Key Lab Marine Enzyme Engn, 2 Xueyuan Rd, Fuzhou, Fujian, Peoples R China
  • [ 7 ] [Ng, Tzi Bun]Chinese Univ Hong Kong, Fac Med, Sch Biomed Sci, Shatin, Hong Kong, Peoples R China
  • [ 8 ] [Streit, Wolfgang R.]Univ Hamburg, Bioctr Klein Flottbek, Microbiol & Biotechnol, Ohnhorststr 18, Hamburg, Germany

Reprint 's Address:

  • 王国增

    [Wang, Guozeng]Fuzhou Univ, Fujian Key Lab Marine Enzyme Engn, 2 Xueyuan Rd, Fuzhou, Fujian, Peoples R China

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Source :

BIOTECHNOLOGY LETTERS

ISSN: 0141-5492

Year: 2019

Issue: 3

Volume: 41

Page: 409-418

1 . 9 7 7

JCR@2019

2 . 0 0 0

JCR@2023

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:189

JCR Journal Grade:3

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 2

SCOPUS Cited Count: 2

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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