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author:

Liu, Fangming (Liu, Fangming.) [1] | Zhang, Honglian (Zhang, Honglian.) [2] | Lu, Shaohua (Lu, Shaohua.) [3] | Wu, Zhenhua (Wu, Zhenhua.) [4] | Zhou, Lin (Zhou, Lin.) [5] | Cheng, Zule (Cheng, Zule.) [6] | Bai, Yanan (Bai, Yanan.) [7] | Zhao, Jianlong (Zhao, Jianlong.) [8] | Zhang, Qiqing (Zhang, Qiqing.) [9] | Mao, Hongju (Mao, Hongju.) [10]

Indexed by:

Scopus SCIE

Abstract:

DNA methylation is closely associated with aberrant epigenetic changes. Previous studies have identified various genes associated with non-small cell lung cancer (NSCLC), but the precise combination responsible for its etiology is still debated. The aim of the present study was to select a new set of NSCLC-related genes using methylation-sensitive high-resolution melting. The promoter methylation status of six selected genes, consisting of protocadherin. subfamily B, 6 (PCDHGB6), homeobox A9 (HOXA9), O6-methylguanine-DNA methyltransferase (MGMT), microRNA (miR)-126, suppressor of cytokine signaling 3 (SOCS3) and Ras association domain family member 5, also termed NORE1A, was evaluated in 54 NSCLC patients. From these samples, genome-wide DNA was extracted and bisulfite conversion was performed along with fluorogenic quantitative polymerase chain reaction to detect methylation values of the six selected promoters. The present results revealed frequent methylation on PCDHGB6, HOXA9 and miR-126, which contrasted with infrequent methylation on MGMT. The results indicated no methylation on either SOCS3 or NORE1A. The sensitivity and specificity of the methylation assessment were 85.2 and 81.5%, respectively, and the analysis results were validated by pyrosequencing. Furthermore, minute comparison of the association between DNA methylation and clinical features was performed. Overall, these results may provide potential information for the development of better clinical diagnostics and more targeted and effective therapies for NSCLC.

Keyword:

CpG diagnosis high-resolution melting lung cancer methylation

Community:

  • [ 1 ] [Liu, Fangming]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 2 ] [Zhang, Honglian]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 3 ] [Wu, Zhenhua]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 4 ] [Zhou, Lin]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 5 ] [Cheng, Zule]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 6 ] [Bai, Yanan]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 7 ] [Mao, Hongju]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China
  • [ 8 ] [Liu, Fangming]Fuzhou Univ, Inst Biomed & Pharmaceut Technol, 523 Gongye Rd, Fuzhou 350002, Fujian, Peoples R China
  • [ 9 ] [Zhao, Jianlong]Fuzhou Univ, Inst Biomed & Pharmaceut Technol, 523 Gongye Rd, Fuzhou 350002, Fujian, Peoples R China
  • [ 10 ] [Zhang, Qiqing]Fuzhou Univ, Inst Biomed & Pharmaceut Technol, 523 Gongye Rd, Fuzhou 350002, Fujian, Peoples R China
  • [ 11 ] [Lu, Shaohua]Fudan Univ, Zhongshan Hosp, Dept Pathol, Shanghai 200032, Peoples R China
  • [ 12 ] [Zhang, Qiqing]Chinese Acad Med Sci, Inst Biomed Engn, Tianjin 300192, Peoples R China
  • [ 13 ] [Zhang, Qiqing]Peking Union Med Coll, Key Lab Biomat Tianjin, Tianjin 300192, Peoples R China

Reprint 's Address:

  • 张其清

    [Mao, Hongju]Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, 865 Changning Rd, Shanghai 200050, Peoples R China;;[Zhang, Qiqing]Fuzhou Univ, Inst Biomed & Pharmaceut Technol, 523 Gongye Rd, Fuzhou 350002, Fujian, Peoples R China

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Source :

ONCOLOGY LETTERS

ISSN: 1792-1074

Year: 2018

Issue: 5

Volume: 15

Page: 7639-7648

1 . 8 7 1

JCR@2018

2 . 5 0 0

JCR@2023

ESI Discipline: CLINICAL MEDICINE;

ESI HC Threshold:182

JCR Journal Grade:4

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 17

SCOPUS Cited Count: 21

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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