• Complex
  • Title
  • Keyword
  • Abstract
  • Scholars
  • Journal
  • ISSN
  • Conference
成果搜索

author:

Zhu, Kongkai (Zhu, Kongkai.) [1] | Lu, Junyan (Lu, Junyan.) [2] | Liang, Zhongjie (Liang, Zhongjie.) [3] | Kong, Xiangqian (Kong, Xiangqian.) [4] | Ye, Fei (Ye, Fei.) [5] | Jin, Lu (Jin, Lu.) [6] | Geng, Heji (Geng, Heji.) [7] | Chen, Yong (Chen, Yong.) [8] (Scholars:陈勇) | Zheng, Mingyue (Zheng, Mingyue.) [9] | Jiang, Hualiang (Jiang, Hualiang.) [10] | Li, Jun-Qian (Li, Jun-Qian.) [11] | Luo, Cheng (Luo, Cheng.) [12]

Indexed by:

Scopus SCIE

Abstract:

New Delhi metallo-beta-lactamase-1 (NDM-1) has emerged as a major global threat to human health for its rapid rate of dissemination and ability to make pathogenic microbes resistant to almost all known beta-lactam antibiotics. In addition, effective NDM-1 inhibitors have not been identified to date. In spite of the plethora of structural and kinetic data available, the accurate molecular characteristics of and details on the enzymatic reaction of NDM-1 hydrolyzing beta-lactam antibiotics remain incompletely understood. In this study, a combined computational approach including molecular docking, molecular dynamics simulations and quantum mechanics/molecular mechanics calculations was performed to characterize the catalytic mechanism of meropenem catalyzed by NDM-1. The quantum mechanics/molecular mechanics results indicate that the ionized D124 is beneficial to the cleavage of the C-N bond within the beta-lactam ring. Meanwhile, it is energetically favorable to form an intermediate if no water molecule coordinates to Zn2. Moreover, according to the molecular dynamics results, the conserved residue K211 plays a pivotal role in substrate binding and catalysis, which is quite consistent with previous mutagenesis data. Our study provides detailed insights into the catalytic mechanism of NDM-1 hydrolyzing meropenem beta-lactam antibiotics and offers clues for the discovery of new antibiotics against NDM-1 positive strains in clinical studies.

Keyword:

beta-Lactam antibiotics Catalytic mechanism MD NDM-1 QM/MM

Community:

  • [ 1 ] [Zhu, Kongkai]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 2 ] [Geng, Heji]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 3 ] [Chen, Yong]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 4 ] [Li, Jun-Qian]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 5 ] [Zhu, Kongkai]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 6 ] [Lu, Junyan]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 7 ] [Kong, Xiangqian]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 8 ] [Ye, Fei]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 9 ] [Jin, Lu]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 10 ] [Geng, Heji]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 11 ] [Zheng, Mingyue]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 12 ] [Jiang, Hualiang]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 13 ] [Luo, Cheng]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 14 ] [Liang, Zhongjie]Soochow Univ, Ctr Syst Biol, Suzhou 215006, Jiangsu, Peoples R China
  • [ 15 ] [Luo, Cheng]Soochow Univ, Ctr Syst Biol, Suzhou 215006, Jiangsu, Peoples R China

Reprint 's Address:

  • 陈勇

    [Chen, Yong]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China

Show more details

Related Keywords:

Source :

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

ISSN: 0920-654X

Year: 2013

Issue: 3

Volume: 27

Page: 247-256

2 . 7 8 2

JCR@2013

3 . 0 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 33

SCOPUS Cited Count: 36

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

Online/Total:270/10044683
Address:FZU Library(No.2 Xuyuan Road, Fuzhou, Fujian, PRC Post Code:350116) Contact Us:0591-22865326
Copyright:FZU Library Technical Support:Beijing Aegean Software Co., Ltd. 闽ICP备05005463号-1