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author:

Zhu, Kongkai (Zhu, Kongkai.) [1] | Lu, Junyan (Lu, Junyan.) [2] | Ye, Fei (Ye, Fei.) [3] | Jin, Lu (Jin, Lu.) [4] | Kong, Xiangqian (Kong, Xiangqian.) [5] | Liang, Zhongjie (Liang, Zhongjie.) [6] | Chen, Yong (Chen, Yong.) [7] (Scholars:陈勇) | Yu, Kunqian (Yu, Kunqian.) [8] | Jiang, Hualiang (Jiang, Hualiang.) [9] | Li, Jun-Qian (Li, Jun-Qian.) [10] | Luo, Cheng (Luo, Cheng.) [11]

Indexed by:

Scopus SCIE

Abstract:

New Delhi metallo-beta-lactmase-1 (NDM-1) is an enzyme that confers antibiotic resistance to bacteria and is thus a serious threat to human health. Almost all clinically available beta-lactam antibiotics can be hydrolyzed by NDM-1. To determine the mechanism behind the wide substrate diversity and strong catalytic ability of NDM-1, we explored the molecular interactions between NDM-1 and different beta-lactam antibiotics using computational methods. Molecular dynamics simulations and binding free energy calculations were performed on enzyme-substrate (ES) complex models of NDM-1-Meropenem, NDM-1-Nitrocefin, and NDM-1-Ampicillin constructed by molecular docking. Our computational results suggest that mutant residues Ile35 and Lys216, and active site loop L1 residues 65-73 in NDM-1 play crucial roles in substrate recognition and binding. The results of our study provide new insights into the mechanism behind the enhanced substrate binding and wider substrate spectrum of NDM-1 compared with its homologous enzymes CcrA and IMP-1. These insights may be useful in the discovery and design of specific and potent inhibitors against NDM-1. (C) 2013 Elsevier Inc. All rights reserved.

Keyword:

Metallo-beta-lactamase Molecular dynamics simulations Molecular mechanics/Poisson-Boltzmann surface area New Delhi metallo-beta-lactmase-1

Community:

  • [ 1 ] [Zhu, Kongkai]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 2 ] [Chen, Yong]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 3 ] [Li, Jun-Qian]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China
  • [ 4 ] [Zhu, Kongkai]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 5 ] [Lu, Junyan]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 6 ] [Ye, Fei]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 7 ] [Jin, Lu]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 8 ] [Kong, Xiangqian]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 9 ] [Yu, Kunqian]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 10 ] [Jiang, Hualiang]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 11 ] [Luo, Cheng]Chinese Acad Sci, Shanghai Inst Mat Med, State Key Lab Drug Res, Shanghai 201203, Peoples R China
  • [ 12 ] [Liang, Zhongjie]Soochow Univ, Ctr Syst Biol, Suzhou 215006, Jiangsu, Peoples R China
  • [ 13 ] [Luo, Cheng]Soochow Univ, Ctr Syst Biol, Suzhou 215006, Jiangsu, Peoples R China

Reprint 's Address:

  • 陈勇

    [Chen, Yong]Fuzhou Univ, Dept Chem, Fuzhou 350108, Fujian, Peoples R China

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Source :

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

ISSN: 0006-291X

Year: 2013

Issue: 1

Volume: 431

Page: 2-7

2 . 2 8 1

JCR@2013

2 . 5 0 0

JCR@2023

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

JCR Journal Grade:3

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count: 11

SCOPUS Cited Count: 11

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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