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author:

Wang, Zheng-Yong (Wang, Zheng-Yong.) [1] | Li, Feng (Li, Feng.) [2] | Zhang, Yan (Zhang, Yan.) [3] | Zhao, Hui (Zhao, Hui.) [4] | Xu, Huo (Xu, Huo.) [5] | Wu, Zai-Sheng (Wu, Zai-Sheng.) [6] (Scholars:吴再生) | Lyu, Jian-Xin (Lyu, Jian-Xin.) [7] | Shen, Zhi-Fa (Shen, Zhi-Fa.) [8]

Indexed by:

EI Scopus SCIE

Abstract:

We propose a DNA nanomachine (simplified as MB-PP) by inserting molecular beacon into a padlock probe for the sensitive and specific detection of K-ras gene mutation. In the presence of target DNA, MB-PP is able to be cyclized by ligase because its two ends are pulled together by target species. In this case, rolling circle amplification (RCA) occurs via the extension of primer by polymerase on cyclized MB-PP(CMB-PP), and thus two complete binding sites of nicking endonuclease are obtained due to the formation of RCA product/CMB-PP duplex. Naturally, a steady stream of two types of nicked fragments flow out from continuous rolling CMB-PP nanomachine after introduction of nickase, one of which can in turn triggers strand-displacement amplification (SDA), leading to the dramatic accumulation of nicked fragments. As a result, even in the presence of a trace amount of wild target DNA, the fluorescence intensity will substantially increase. Utilizing this DNA machine, the K-ras gene can be detected down to 50 pM with the linear response range from 50 pM to 10 nM. Moreover, the point mutation existing in the codon 12 of K-ras can be easily distinguished from the wild type. (C) 2017 Elsevier B. V. All rights reserved.

Keyword:

K-ras gene Molecular beacon-embedded padlock probe (MB-PP) Nicking-mediated rolling circle amplification (N-RCA) Strand-displacement amplification (SDA)

Community:

  • [ 1 ] [Wang, Zheng-Yong]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 2 ] [Li, Feng]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 3 ] [Zhang, Yan]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 4 ] [Zhao, Hui]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 5 ] [Lyu, Jian-Xin]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 6 ] [Shen, Zhi-Fa]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China
  • [ 7 ] [Li, Feng]Fuzhou Univ, Fujian Prov Key Lab Canc Metastasis Chemoprevent, Canc Metastasis Alert & Prevent Ctr,Coll Chem, Pharmaceut Photocatalysis State Key Lab Photocata, Fuzhou 350002, Fujian, Peoples R China
  • [ 8 ] [Zhao, Hui]Fuzhou Univ, Fujian Prov Key Lab Canc Metastasis Chemoprevent, Canc Metastasis Alert & Prevent Ctr,Coll Chem, Pharmaceut Photocatalysis State Key Lab Photocata, Fuzhou 350002, Fujian, Peoples R China
  • [ 9 ] [Xu, Huo]Fuzhou Univ, Fujian Prov Key Lab Canc Metastasis Chemoprevent, Canc Metastasis Alert & Prevent Ctr,Coll Chem, Pharmaceut Photocatalysis State Key Lab Photocata, Fuzhou 350002, Fujian, Peoples R China
  • [ 10 ] [Wu, Zai-Sheng]Fuzhou Univ, Fujian Prov Key Lab Canc Metastasis Chemoprevent, Canc Metastasis Alert & Prevent Ctr,Coll Chem, Pharmaceut Photocatalysis State Key Lab Photocata, Fuzhou 350002, Fujian, Peoples R China
  • [ 11 ] [Lyu, Jian-Xin]Hangzhou Med Coll, Dept Lab Med, Peoples Hosp, Hangzhou 310053, Zhejiang, Peoples R China

Reprint 's Address:

  • 吴再生

    [Shen, Zhi-Fa]Wenzhou Med Univ, Inst Funct Nucle Acids & Personalized Canc Theran, Zhejiang Prov Key Lab Med Genet,Lab Lab Med, Sch Lab Med & Life Sci,Minist Educ China,Key Lab, Wenzhou 325035, Peoples R China;;[Wu, Zai-Sheng]Fuzhou Univ, Fujian Prov Key Lab Canc Metastasis Chemoprevent, Canc Metastasis Alert & Prevent Ctr,Coll Chem, Pharmaceut Photocatalysis State Key Lab Photocata, Fuzhou 350002, Fujian, Peoples R China;;[Lyu, Jian-Xin]Hangzhou Med Coll, Dept Lab Med, Peoples Hosp, Hangzhou 310053, Zhejiang, Peoples R China

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Source :

SENSORS AND ACTUATORS B-CHEMICAL

ISSN: 0925-4005

Year: 2017

Volume: 251

Page: 692-698

5 . 6 6 7

JCR@2017

8 . 0 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

ESI HC Threshold:226

JCR Journal Grade:1

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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