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author:

Wang, Liu (Wang, Liu.) [1] | Bai, Linlin (Bai, Linlin.) [2] | Wang, Hongmei (Wang, Hongmei.) [3] | He, Kaiyu (He, Kaiyu.) [4] | Wang, Rui (Wang, Rui.) [5] | Wang, Qiang (Wang, Qiang.) [6] | Zhang, Fang (Zhang, Fang.) [7] (Scholars:张芳) | Xu, Xiahong (Xu, Xiahong.) [8]

Indexed by:

Scopus SCIE

Abstract:

Rapid and accurate detection of Salmonella is extremely important to ensure food safety. Combining nucleic acid amplification with CRISPR/Cas12a can realize sensitive and specific detection of foodborne pathogens. However, present CRISPR/Cas-based methods mainly depend on fluorophore and quencher dual-labeled ssDNA as the reporter, which brings in high cost and steric hindrance. Herein, a new signal output format has been developed. The method takes advantage of graphene oxide adsorbing FAM-ssDNA and quenching the fluorescent emission while CRISPR/Cas12a recovering the fluorescent emission by trans-cleaving the FAM-ssDNA. Factors affecting the performance of the sensor have been optimized, and it is shown that the oligonucleotide of 12 nt with the fluorophore modified at the 3 ' end displays the highest signal to noise ratio. The signal output method has been combined with recombinase polymerase amplification for detection of Salmonella and presents consistent specificity and sensitivity (5 x 101 copies) as real-time PCR. By replacing the dual-labeled ssDNA reporter with FAM-ssDNA and GO, this signal output method saves similar to 65% cost. Notably, this method does not require a real-time thermal cycler or any other sophisticated instrument. Besides pathogens, this easy and convenient method can also be extended to detect other targets.

Keyword:

CRISPR/Cas12a Fluorescent recovery Graphene oxide Salmonella Visual detection

Community:

  • [ 1 ] [Wang, Liu]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 2 ] [Bai, Linlin]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 3 ] [Wang, Hongmei]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 4 ] [He, Kaiyu]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 5 ] [Wang, Qiang]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 6 ] [Xu, Xiahong]Zhejiang Acad Agr Sci, Inst Agroprod Safety & Nutr, State Key Lab Managing Biot & Chem Threats Qual &, Hangzhou 310021, Peoples R China
  • [ 7 ] [Bai, Linlin]Fudan Univ, Human Phenome Inst, State Key Lab Genet Engn, Shanghai 200438, Peoples R China
  • [ 8 ] [Wang, Rui]Fudan Univ, Human Phenome Inst, State Key Lab Genet Engn, Shanghai 200438, Peoples R China
  • [ 9 ] [Bai, Linlin]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350108, Peoples R China
  • [ 10 ] [Zhang, Fang]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350108, Peoples R China
  • [ 11 ] [Wang, Liu]Minist Agr & Rural Affairs, Key Lab Traceabil Agr Genet Modified Organisms, Hangzhou 310021, Peoples R China
  • [ 12 ] [Wang, Liu]Minist Agr & Rural Affairs, Key Lab Informat Traceabil Agr Prod, Hangzhou 310021, Peoples R China

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Source :

MICROCHEMICAL JOURNAL

ISSN: 0026-265X

Year: 2023

Volume: 191

4 . 9

JCR@2023

4 . 9 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

ESI HC Threshold:39

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 4

SCOPUS Cited Count: 4

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 2

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